Возраст домена | 18 лет |
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Pathguide: the pathway resource list
biological, pathway, biopax, databases, MSKCC, cbio, bioinformatics, software, tools, computational biology
Pathguide: The Pathway Resource List, provided by the Computational Biology Center at Memorial Sloan-Kettering Cancer Center (MSKCC) aims to provide a comprehensive catalog of biological pathway resources available on the internet. Pathguide is a spin-off project of the BioPAX effort (http://www.biopax.org).
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Сайт | Общие фразы | PR | тИЦ | Alexa Rank | Alexa Country | |
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nih.gov | 12 | 8 |
0 | 113 | 65 | |
pantherdb.org | 10 | 6 |
10 | 491195 | 177776 | |
pathwaycommons.org | 9 | 5 |
0 | 2332524 | 907060 | |
biostars.org | 9 | 6 |
0 | 21953 | 12160 | |
wikipedia.org | 7 | 9 |
0 | 5 | 6 | |
reactome.org | 7 | 7 |
10 | 188626 | 24790 | |
ingenuity.com | 7 | 6 |
10 | 338078 | 167539 | |
genome.jp | 7 | 6 |
70 | 131110 | 49719 | |
ncifcrf.gov | 6 | 6 |
30 | 85336 | 21309 | |
biocarta.com | 6 | 6 |
10 | 19588831 | Нет данных | |
Еще 40 сайтов после авторизации |
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Google Analytics | Нет доступа | Нет доступа | n/a |
Данные linkpad ( 31 Января 2017 ) | |
Количество ссылок на сайт | 48 |
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Количество найденных анкоров | 13 |
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Количество доменов, на которые ссылается сайт | 492 |
Количество исходящих анкоров | 523 |
Внешние ссылки главной страницы ( 703 ) | |
biopax.org | BioPAX |
cbio.mskcc.org | cBio |
mskcc.org | MSKCC |
ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&do... | Pathguide Publication |
2p2idb.cnrs-mrs.fr/ | 2P2Idb - The Protein-Protein Interaction Inhibition Database |
gemdock.life.nctu.edu.tw/3d-interologs/ | 3D-Interologs - 3D-Interologs |
3did.irbbarcelona.org/ | 3DID - 3D interacting domains |
acsn.curie.fr/ | ACSN - Atlas of Cancer Signalling Network |
adan.crg.es/ | ADAN - Prediction of protein-protein interaction of modular domains |
ahd.cbi.pku.edu.cn/ | AHD2.0 - Arabidopsis Hormone Database 2.0 |
cgg.ebi.ac.uk/services/allfuse/ | AllFuse - Functional Associations of Proteins in Complete Genomes |
amaze.ulb.ac.be/ | aMAZE - Protein Function and Biochemical Pathways Project |
114.80.116.140/Computational-Biology/ANAP/ANAP_V1.2/ | ANAP - Arabidopsis Network Analysis Pipeline |
ania-1433.lifesci.dundee.ac.uk/prediction/webserver/index.py | ANIA - ANnotation and Integrated Analysis of the 14-3-3 interactome |
bioinfo.life.hust.edu.cn/AnimalTFDB/ | AnimalTFDB - Animal Transcription Factor Database |
ddg-pharmfac.net/antijen/AntiJen/antijenhomepage.htm | AntiJen - AntiJen a Kinetic, Thermodynamic and Cellular Database |
apid.dep.usal.es/ | APID - Agile Protein Interactomes DataServer |
araport.org/ | Araport - Arabidopsis Information Portal |
autophagy-regulation.org/ | ARN - The Autophagy Regulatory Network |
as-alps.nagahama-i-bio.ac.jp/ | AS-ALPS - Alternative Splicing - induced ALteration of Protein Structure |
mdl.shsmu.edu.cn/ASD/ | ASD - Allosteric Database |
nic.ucsf.edu/asedb/ | ASEdb - Alanine Scanning Energetics Database |
wwwmgs.bionet.nsc.ru/mgs/gnw/aspd/ | ASPD - Artificial Selected Proteins/Peptides Database |
protchem.hunnu.edu.cn/toxin/index.jsp | ATDB - Animal Toxin Database |
megabionet.org/atpid/webfile/ | AtPID - Arabidopsis thaliana Protein Interactome Database |
atpin.bioinfoguy.net/cgi-bin/atpin.pl | AtPIN - Arabidopsis thaliana Protein Interactome Network |
compsysbio.org/bacteriome/ | Bacteriome.org - Bacterial Protein Interaction Database for Escherichia Coli |
sbi.imim.es/web/index.php/research/servers/biana?page=biana.... | BIANA - Biologic Interaction and Network Analysis |
tsailab.chem.pacific.edu/wikiBID/index.php/Main_Page | BID - Binding Interface Database |
bond.unleashedinformatics.com/ | BIND - Biomolecular Interaction Network Database |
thebiogrid.org/ | BioGRID - Biological General Repository for Interaction Datasets |
biologicalnetworks.org/ | BiologicalNetworks - BiologicalNetworks |
bioplex.hms.harvard.edu/ | BioPlex - Biophysical Interactions of ORFeome-based Complexes |
biozon.org/ | Biozon - Biozon |
bisc.soe.ucsc.edu/ | BISC - BInary SubComplex Database |
kegg.jp/kegg/brite.html | BRITE - Functional Hierarchies and Binary Relationships of Biological Entities |
mssm.edu/labs/iyengar/resources | CA1Neuron - Pathways of the hippocampal CA1 neuron |
bioguo.org/CADgene/ | CADgene - Coronary Artery Disease Gene Database |
cancer.cellmap.org | Cancer Cell Map - The Cancer Cell Map |
bis.zju.edu.cn/CancerNet/ | CancerNet - |
canevolve.org/AnalysisResults/AnalysisResults.html | canEvolve - |
interactome.dfci.harvard.edu/ | CCSB Interactome Database - Center for Cancer Systems Biology Interactome Database |
cellcircuits.org | CellCircuits - CellCircuits |
pharminfo.zju.edu.cn/chd | CHD@ZJU - Coronary Heart Disease @ZJU Database |
potentia.cbs.dtu.dk/ChemProt/ | ChemProt - ChemProt |
mips.helmholtz-muenchen.de/cider | CIDeR - |
complement.us/labweb/cmap/ | CMAP - Complement Map Database |
colonatlas.org/ | Colorectal Cancer Atlas - |
comppi.linkgroup.hu/ | comPPI - Compartmentalized Protein-Protein Interaction Database |
antares.protres.ru/comsin/ | ComSim - Database of protein structures in bound (Complex) and unbound (Single) states |
bioinformatics.psb.ugent.be/cornet/ | CORNET - CORrelation NETworks |
mips.helmholtz-muenchen.de/corum/# | CORUM - Comprehensive resource of mammalian protein complexes |
coxpresdb.jp/ | COXPRESdb - Coexpressed Gene Database |
cpdb.molgen.mpg.de/CPDB | CPDB - ConsensusPathDB |
csp.medic.kumamoto-u.ac.jp/ | CSP - Cytokine Signaling Pathway Database |
calcium.uhnres.utoronto.ca/ctdb/flash.htm | CTDB - Calmodulin Target Database |
cutdb.burnham.org/ | CutDB - CutDB: Proteolytic Event Database |
cyclonet.biouml.org/index.html | Cyclonet - Cyclonet |
wodaklab.org/dancer/ | DAnCER - Disease Annotated Chromatin Epigenetics Resource |
gemdock.life.nctu.edu.tw/dapid/ | DAPID - Domain Annotated Protein-protein Interaction Database |
dasmi.de/dasmiweb.php | DASMI - Distributed Annotation System for Molecular Interactions |
140.138.144.145/~dbSNO/ | dbSNO - database of Cysteine S-NitrOsylation |
biosino.org/DIDWeb/index.html | DDIB - Database of Domain Interactions and Bindings |
deathdomain.org/ | DeathDomain - Death Domain Database |
depod.bioss.uni-freiburg.de/ | DEPOD - the human DEPhOsphorylation Database |
dga.nubic.northwestern.edu/pages/search.php | DGA - Disease and Gene Annotations |
webclu.bio.wzw.tum.de/dima/index.jsp | DIMA - Domain Interaction Map |
dip.doe-mbi.ucla.edu/dip/Main.cgi | DIP - Database of Interacting Proteins |
comp-sysbio.org/dipos/index.php | DIPOS - Database of Interacting Proteins in Oryza Sativa |
domine.utdallas.edu/cgi-bin/Domine | DOMINE - Database of Protein Domain Interactions |
mint.bio.uniroma2.it/domino/ | DOMINO - Domain Peptide Interactions Database |
orion.rnet.missouri.edu/~nz953/DOMMINO/ | DOMMINO - Database of MacroMolecular Interactions |
dimer.tamu.edu/doodle/ | Doodle - Database of oligomerization domains from lambda experiments |
dopanet.org/ | DopaNet - DopaNet |
drpias.net/ | Dr. PIAS - Druggable Protein-protein Interaction Assessment System |
omolgen.mpg.de/~ag_ribo/ag_brimacombe/drc/ | DRC - Database of Ribosomal Crosslinks |
droidb.org/ | DroID - The Drosophila Interactions Database |
dropnet.gred-clermont.fr/site/ | DroPNet - Drosophila Protein Network |
hippron.com/hippron/index.html | DSM - Dynamic Signaling Maps |
pnet.kaist.ac.kr/e3net/ | E3Net - |
ecid.bioinfo.cnio.es/ | EciD - E. coli Interaction Database |
sdmc.lit.org.sg:8080/fimm/ | FIMM - Functional Molecular Immunology |
flight.icr.ac.uk/ | FLIGHT - FLIGHT |
phytosystems.ulg.ac.be/florid/ | FLOR-ID - FLOweRing Interactive Database |
flydpi.nhri.org.tw/protein/fly/general_search/ | Fly-DPI - Drosophila melanogaster Database of Protein Interactomes |
flybase.org/ | FlyBase - FlyBase: a database of Drosophila Genes & Genomes |
flymine.org/ | FlyMine - FlyMine |
gifts.univ-mrs.fr/FlyNets/FlyNets_home_page.html | FlyNets - FlyNets |
flyode.boun.edu.tr/ | FlyOde - |
comp-sysbio.org/fppi/ | FPPI - Fussarium graminearum Protein-Protein Interaction Database |
funcoup.sbc.su.se/search/ | FunCoup - Networks of Functional Coupling |
igs.cnrs-mrs.fr/FusionDB/ | FusionDB - Prokaryote Gene Fusion Events |
genomics.senescence.info/genes/ | GenAge - GenAge: The Ageing Gene Database |
gene3d.biochem.ucl.ac.uk/ | Gene3D - Gene3D |
genemania.org | GeneMANIA - GeneMANIA |
germonline.org/index.html | GermOnline - GermOnline |
geneontology.org | GO - Gene Ontology Consortium |
proteome.com/control/researchproducts/insilico/proteome/deta... | YPD - Yeast Proteome Database |
biophysics.biol.uoa.gr/gpDB/index.jsp | gpDB - A Database of G-Proteins and their Interaction with GPCRs |
structuralbiology.cau.edu.cn/GraP/ | GraP - Platform of Functional Genomics Analysis in Gossypium raimondii |
biochem.uthscsa.edu/seale/Chap/el_int.html | GroEL PPI - Proteins that interact with GroEL and factors that affect their release |
gwidd.compbio.ku.edu/ | GWIDD - Genome-WIde protein Docking Database |
h-invitational.jp/ | H-InvDB - H-InvDB: Annotated Human Gene Database |
discovery.informatics.uab.edu/HAPPI/ | HAPPI - Human Annotated and Predicted Protein Interactions Database |
nesg.org:9090/HCPIN/ | HCPIN - Human Cancer Protein Interaction Network |
cbrc.kaust.edu.sa/hcvpro/ | HCVpro - Hepatitus C Virus Protein Interaction Database |
hdbase.org/ | HDBase - Huntington's Disease Base |
hdnetdb.sysbiolab.eu/ | HDNetDB - Huntington's Disease Network DataBase |
research.nhgri.nih.gov/homeodomain/ | HDR - Homeodomain Resource Database |
himap.org/ | HiMAP - Human Interactome Map |
hint.yulab.org/ | HINT - High-quality Interactomes |
hintkb.ceid.upatras.gr/ | HINT-KB - Human INTeractome Knowledge Base |
cbdm-01.zdv.uni-mainz.de/~mschaefer/hippie/ | HIPPIE - Human Integrated Protein-Protein Interaction rEference |
hintdb.hgc.jp/htp/ | HitPredict - HitPredict |
ncbi.nlm.nih.gov/genome/viruses/retroviruses/hiv-1/interacti... | HIV-1 at NCBI - HIV-1, Human Protein Interaction Database at NCBI |
hiv.lanl.gov/content/immunology/ | HIVMID - HIV Molecular Immunology Database |
mint.bio.uniroma2.it/HomoMINT/Welcome.do | HomoMINT - Human Molecular Interaction Database |
prism.ccbb.ku.edu.tr/hotregion/ | HotRegion - A Database of Cooperative Hotspots |
prism.ccbb.ku.edu.tr/hotsprint/ | HotSprint - Database of Computational Hot Spots of Protein Interfaces |
dpi.nhri.org.tw | HP-DPI - Helicobacter pylori Database of Protein Interactomes |
wilab.inha.ac.kr/hpid/webforms/intro.aspx | HPID - Human Protein Interaction Database |
agbase.msstate.edu/hpi/main.html | HPIDB - Host-Pathogen Interaction Database |
hprd.org/ | HPRD - Human Protein Reference Database |
plantgrn.noble.org/hrgrn/ | HRGRN - HRGRN |
oralgen.lanl.gov/cgi-bin/pp.cgi?dbname=hhv1 | HSV1 PPI - Protein-Protein Interactions Table for Human herpesvirus 1 |
lbbc.ibb.unesp.br/htri/ | HTRIdb - Human Transcriptional Regulation Interaction Database |
humanproteinpedia.org/ | Human Proteinpedia - Human Proteinpedia |
bioinformatics.biol.uoa.gr/human_gpdb/ | Human-gpDB - A database of human GPCRs, G-proteins, Effectors and their interactions |
humanmine.org/humanmine/begin.do | HumanMine - |
genexplain.com/humanpsd/ | HumanPSD - Human Proteome Survey Database |
hupi.ircm.qc.ca/hupi/ | HuPI - database of the Human Proteotheque Initiative |
interactome.baderlab.org/ | HuRI - The Human Reference Protein Interactome Mapping Project |
ophid.utoronto.ca | I2D - Interologous Interaction Database |
ncbi.nlm.nih.gov/Structure/ibis/ibis.cgi | IBIS - Inferred Biomolecular Interactions Server |
icbs.ics.uci.edu/ | ICBS - Inter-Chain Beta-Sheets |
iid.ophid.utoronto.ca/iid/Search_By_Proteins/ | IID - Integrated Interactions Database |
syslab.nchu.edu.tw/IIIDB/ | IIIDB - Isoform-Isoform Interaction Database |
imexconsortium.org/ | IMEx - The International Molecular Exchange Consortium |
ib.insilicom.com/ | IMID - Integrated Molecular Interaction Database |
caps.ncbs.res.in/imotdb/ | iMOTdb - Interacting motifs in proteins database |
innatedb.ca/ | InnateDB - A Knowledge Resource for Innate Immunity Interactions and Pathways |
instruct.yulab.org/ | INstruct - a database of 3D protein interactome networks with structural resolution |
ebi.ac.uk/intact | IntAct - IntAct Molecular Interaction Database |
ncbi.nlm.nih.gov/pubmed/10786290 | INTERACT - INTERACT Protein-protein interaction database |
interactome-cmp.ucsf.edu/ | Interactome - Krogan Lab Interactome Database |
interdom.i2r.a-star.edu.sg/ | InterDom - Database of Interacting Domains |
biodev.cea.fr/interevol/ | InterEvol - InterEvol |
home.ku.edu.tr/~okeskin/INTERFACE/INTERFACES.html | Interfaces - DATASET OF PROTEIN-PROTEIN INTERFACES |
mcube.nju.edu.cn/cgi-bin/intermitobase/home.pl | InterMitoBase - InterMitoBase |
interolog.gersteinlab.org/ | Interolog - Interolog/Regulog Database |
biodev.extra.cea.fr/interoporc/Default.aspx | InteroPorc - Automatic molecular interaction predictions |
interpare.kobic.re.kr/index.html | InterPare - The Protein Interfaceome Database |
russelllab.org/cgi-bin/tools/interprets.pl | InterPreTS - Interaction Prediction through Tertiary Structure |
hanlab.genetics.ac.cn/IntNetDB.htm | IntNetDB - Integrated Protein Interaction Network Database |
ipfam.org/ | iPfam - Protein families database of alignments and HMMs |
ippidb.cdithem.fr/ | iPPI-DB - Inhibitors of Protein-Protein Interaction Database |
pir.georgetown.edu/pirwww/dbinfo/iproclass.shtml | iProClass - iProClass |
irefindex.org/wiki/index.php?title=iRefIndex | iRefIndex - Interaction Reference Index |
wodaklab.org/iRefWeb/ | iRefWeb - Interaction Reference Index Web Interface |
ir.hgc.jp/ | IRView - IRView |
bioinformatics.charite.de/jail/ | JAIL - JAIL |
jet2viewer.upmc.fr/jet2_viewer/report/ | JET2 Viewer - |
kbdock.loria.fr/ | KBDOCK - A Resource for Knowledge-Based Protein Docking |
bioinf.xmu.edu.cn/databases/kdbi/kdbi.php | KDBI - Kinetic Data of Bio-molecular Interactions database |
gemdock.life.nctu.edu.tw/kidfammap/ | KIDFamMap - Kinase-Inhibitor-Disease Family Map |
kinasedb.ontology.hgc.jp:8081/ | KinaseDB - Kinase Pathway Database |
discovery.cs.wayne.edu/ppiweb/kups/ | KUPS - The University of Kansas Proteomics Service |
bicresources.jcbose.ac.in/ssaha4/lmpid/ | LMPID - Linear Motif mediated Protein-Protein Interaction Database |
matrixdb.univ-lyon1.fr/ | MatrixDB - Extracellular Matrix Interactions Database |
clarivate.com/products/metacore | MetaCore - MetaCore pathway database |
wehih.wehi.edu.au/mhcpep/ | MHCPEP - Database of MHC binding peptides |
47.88.84.236/Miasdb/ | MiasDB - |
mimi.ncibi.org/MimiWeb/main-page.jsp | MiMI - Michigan Molecular Interactions |
mint.bio.uniroma2.it/ | MINT - Molecular Interaction Database |
mips.gsf.de/genre/proj/yeast/index.jsp | MIPS CYGD - MIPS Comprehensive Yeast Genome Database |
mips.helmholtz-muenchen.de/genre/proj/mpact | MIPS MPact - Protein Interaction and Complex Database |
mips.helmholtz-muenchen.de/proj/ppi/ | MIPS-MPPI - MIPS Mammalian Protein-Protein Interaction Database |
bmi.ana.med.uni-muenchen.de/miriad/ | miRIAD - intragenic microRNA database |
mistdb.com/ | MiST2 - Microbial Signal Transduction Database |
mitointeractome.kobic.kr/ | MitoInteractome - Mitochondrial Protein Interactome Database |
mitop.de:8080/mitop2/ | MitoP2 - Mitochondrial Proteome |
ncbi.nlm.nih.gov/Structure/MMDB/docs/mmdb_search.html | MMDB - Molecular Modeling Database |
mnm.engr.uconn.edu/MNM/SMSSearchServlet | MnM - Minimotif Miner |
mobidb.bio.unipd.it/ | MobiDB - a database of protein disorder and mobility annotations |
modbase.compbio.ucsf.edu/modbase-cgi/index.cgi | ModBase - ModBase |
jcvi.org/mpidb/interaction.php?dbsource=MPI-LIT | MPI-LIT - The Microbial Protein Interaction Database |
bioinformatics.cau.edu.cn/cgi-bin/zzd-cgi/ppi/mpid.pl | MPID - Magnaporthe grisea Protein-protein Interaction Database |
variome.bic.nus.edu.sg/mpidt/index.html | MPID-T - MHC-Peptide Interaction Database |
biolinfo.org/mpid-t2/ | MPID-T2 - MHC-Peptide Interaction Database-TR |
jcvi.org/mpidb/about.php | MPIDB - Microbial Protein Interaction Database |
bio.scu.edu.cn/mppi/ | MppDB - Mouse Protein-Protein Interaction Database |
bicresources.jcbose.ac.in/ssaha4/mycbase/ | MYCbase - A Database of MYC |
portal.biobase-international.com/build_ghpywl/idb/1.0/html/b... | MycoPathPD - Human Fungal Pathogens Proteome Database |
ncg.kcl.ac.uk/ | NCG - Network of Cancer Genes |
protein.cau.edu.cn/ncpi/ | NCPI - Neurospora Crassa Protein Interactome Database |
mips.helmholtz-muenchen.de/proj/ppi/negatome/ | Negatome - The Negatome Database |
molecularconnections.com/?page_id=17582 | NetPro - Molecular Connections Database of Protein Interactions |
networkin.info/ | NetworKIN - NetworKIN |
nexontology.org/ | NeXO - The Network Extracted Ontology |
nrf2.elte.hu/ | NRF2ome - Integrated regulatory network of Nuclear Factor (erythroid-derived 2)-like 2 (NRF2) |
nursa.org/nursa/index.jsf | NURSA - Nuclear Receptor Signaling Atlas |
ifti.org/ | ooTFD - Object Oriented Transcription Factors Database |
rdc02.uits.iu.edu:7777/pls/apex/f?p=119:1:4182498048544125 | PAGED - Pathway and Gene Enrichment Database |
cls.zju.edu.cn/pair/ | PAIR - The Predicted Arabidopsis Interactome Resource |
curatools.curagen.com/ | Pathcalling - Curagen Pathcalling |
pathcards.genecards.org/ | PathCards - Pathway Unification Database |
ncgr.org/pathdb/ | PathDB - Pathways Database |
elsevier.com/solutions/pathway-studio-biological-research | Pathway Studio - Pathway Studio |
qiagenbioinformatics.com/products/ingenuity-pathway-analysis... | Pathways Knowledge Base - Ingenuity Pathways Knowledge Base |
patricbrc.org/ | PATRIC - PathoSystems Resource Integration Center |
pathwaycommons.org | PC - Pathway Commons |
74.54.147.134/~ezepcdb3/ | PCDB - Protein Conformational Database |
bdg.hfut.edu.cn/pcppi/ | PCPPI - Penicillium-Crop Protein-Protein Interactions database |
bioinsilico.org/cgi-bin/PCRPIDB/htmlPCRPI/home | PCRPi-DB - Presaging Critical Residues in Protein interfaces-DataBase |
ebi.ac.uk/pdbe-site/pdbemotif/ | PDBeMotif - Protein Data Bank in Europe, Motifs and Sites |
ebi.ac.uk/thornton-srv/databases/cgi-bin/pdbsum/GetPage.pl?p... | PDBsum - PDBsum: pictorial database of 3D structures in the Protein Data Bank |
abc.med.cornell.edu/pdzbase | PDZBase - PDZ domain protein-protein interaction database |
pepbank.mgh.harvard.edu/ | PepBank - PepBank Peptide Database |
pepcyber.org/PPEP/ | PepCyber - PepCyber: P~Pep |
peroxisomedb.org/home.jsp | PeroxisomeDB - Peroxisome Database |
phospho.elm.eu.org/ | PhosphoBase - Database of phosphorylation sites |
phosphogrid.org/ | PhosphoGRID - PhosphoGRID |
phosphonetworks.org/ | PhosphoNetworks - PhosphoNetworks |
kinase.bioinformatics.tw/ | PhosphoPOINT - PhosphoPOINT |
phosphosite.org/homeAction.action | PhosphoSite - Cell Signaling Technology's PhosphoSite Database |
pipe.scs.fsu.edu/ | PI2PE - Protein Interface/Interior Prediction Engine |
modbase.compbio.ucsf.edu/pibase/introduction.html | PIBASE - PIBASE |
www-cryst.bioc.cam.ac.uk/~richard/piccolo/about.php | PICCOLO - PICCOLO |
pickle.gr/ | Pickle - Protein InteraCtion KnowLedgebasE |
patricbrc.org/portal/portal/patric/HPITool | PIG - Host Pathogen Interactions |
research.nhgri.nih.gov/pigment_cell/ | Pigment Cell Gene Resource - Pigment Cell Gene Resource |
caps.ncbs.res.in/pimadb/ | PIMADb - Database of Protein-Protein Interactions in Macromolecular Assemblies |
pim.hybrigenics.com/ | PIMRider - Protein Interaction Map - Hybrigenics |
omics.bjcancer.org/pina/ | PINA - Protein Interaction Network Analysis |
pin.mskcc.org/ | PINdb - Proteins Interacting in the Nucleus database |
bioinfodatabase.com/pint | PINT - Protein-protein Interactions Thermodynamic Database |
compbio.dundee.ac.uk/www-pips/ | PIPs - Human Protein-Protein Interaction Prediction |
pisite.hgc.jp/ | PiSITE - Database of Protein Interaction SITEs |
plantpan2.itps.ncku.edu.tw/ | PlantPAN - Plant Promoter Analysis Navigator |
point.bioinformatics.tw/Welcome.do | POINT - Prediction of Interactome |
anc.ed.ac.uk/mscs/PPID/ | PPID - Protein-Protein Interaction Database |
protein.cau.edu.cn/ppira/ | PPIRA - Protein-Protein Interactions between Ralstonia solanacearum and Arabidopsis thaliana |
140.113.15.76/ppisearch/ | PPISearch - Protein-Protein Interaction Search |
fantom21.gsc.riken.go.jp/PPI/ | PPIV (FANTOM) - RIKEN FANTOM Protein Protein Interaction Viewer |
ebi.ac.uk/pdbe/pisa/ | PQS - Protein Quaternary Structure database |
visant.bu.edu/ | Predictome - Predictome |
bhapp.c2b2.columbia.edu/PrePPI/ | prePPI - prePPI |
primos.fh-hagenberg.at/ | PRIMOS - Protein Interaction and Molecule Search database |
bis.zju.edu.cn/prin/ | PRIN - Predicted Rice Interactome Database |
cosbi.ku.edu.tr/prism/ | PRISM - Protein Interactions by Structural Matching |
cytogen.com/pipeline/index.php#axcell | ProChart - ProChart database of signal transduction pathway information |
cse.unl.edu/~profess/ | PROFESS - Protein Function, Evolution, Structure and Sequence Database |
prl.mbi.ucla.edu/prlbeta/ | Prolinks - Prolinks |
bit.uq.edu.au/ProMesh/ | ProMesh - ProMesh Protein-Protein Interaction Database |
bioinformatics.charite.de/promiscuous/ | PROMISCUOUS - PROMISCUOUS |
myriad-pronet.com/ | ProNet - Protein-protein Interaction Database |
dunbrack2.fccc.edu/protcid/ | ProtCID - PROTein Common Interfaces Database |
ces.clemson.edu/compbio/protcom | PROTCOM - Database of Protein Complexes |
proteinlounge.com | Protein Lounge - Protein Lounge |
biobase-international.com/product/proteome | Proteome - |
psibase.kobic.re.kr/index.cgi | PSIbase - Protein Structural Interactome Database |
bioconductor.org/packages/release/bioc/html/PSICQUIC.html | PSICQUIC - Proteomics Standards Initiative Common QUery InterfaCe |
pstiing.icr.ac.uk/ | pSTIING - Protein, Signalling, Transcriptional Interactions & Inflammation Networks Gateway |
bdg.hfut.edu.cn/ptir/ | PTIR - Predicted Tomato Interactome Resource |
ptmcode.embl.de/ | PTMcode - PTMcode 2 |
megabionet.org/aspd/ | PubAngioGen - Public AngioGenesis research portal |
coremine.com/medical/#search | PubGene - PubGene |
sequenceome.kobic.kr/PutidaNET/ | PutidaNET - PutidaNET |
web16.kazusa.or.jp/rapid/ | RAPID - Resource of Asian Primary Immunodeficiency Diseases |
140.138.144.141/~RegPhos/ | RegPhos - Regulatory Network in Protein Phosphorylation |
rgd.mcw.edu/wg/home/pathway2/molecular-pathways2 | RGD - Rat Genome Database pathway resource |
rice.kps.ku.ac.th/Site/ | RiceGeneThresher - RiceGeneThresher: bioinformatics tool site for rice genes discovery |
ricephylogenomics-khu.org/kinase/ | RKD - Rice Kinase Database |
smartdb.bioinf.med.uni-goettingen.de/ | S/MARt_DB - The S/MAR transaction DataBase |
scansite3.mit.edu/#home | Scansite - Scansite |
scoppi.biotec.tu-dresden.de/scoppi/index.html | SCOPPI - Structural classification of protein-protein interfaces |
projects.biotec.tu-dresden.de/scowlp/ | SCOWLP - structural classification of protein binding reasons for atomic comparative analysis of protein interactions |
yeastgenome.org/ | SGD Pathway Tools - Saccharomyces Genome Database Pathway Tools |
signaling-gateway.org/molecule/ | Signaling Gateway - UCSD-Nature Signaling Gateway Molecule Pages |
signalink.org/ | SignaLink 2 - SignaLink 2: a multi-layered signaling pathway resource |
signor.uniroma2.it/ | SIGNOR - The SIGnaling Network Open Resource |
snap.genomics.org.cn/ | Snap - a Single Nucleotide Polymorphism Annotation Platform |
compbio.dundee.ac.uk/SNAPPI/ | SNAPPI-DB - Structures, iNterfaces and Alignments for Protein-Protein Interactions |
genome.jouy.inra.fr/spid/ | SPiD - Subtilis Protein interaction Database |
cmb.bnu.edu.cn/SPIDer/index.html | SPIDer - Saccharomyces Protein-protein Interaction Database |
trantor.bioc.columbia.edu/cgi-bin/SPIN/ | SPIN-PP - Surface Properties of Interfaces - Protein-Protein Interfaces |
srv00.recas.ba.infn.it/SpliceAidF/ | SpliceAid-F - A Database of Human Splicing Factors and their Binding Sites |
spliceosomedb.ucsc.edu/ | Spliceosome Database - |
mdl.shsmu.edu.cn/SPPS/module/mainpage/mainpage.jsp | SPPS - Sequence-based Protein Partner Search |
string-db.org | STRING - Search Tool for the Retrieval of Interacting Genes/Proteins |
cb.csail.mit.edu/cb/struct2net/webserver/ | Struct2Net - Structure-based Computational Predictions of Protein-Protein Interactions |
suba.live | SUBA4 - The SUBcellular localization database for Arabidopsis proteins |
bioinformatics.charite.de/supertarget/ | SuperTarget - SuperTarget |
syfpeithi.de/ | SYFPEITHI - Database of MHC Ligands and Peptide Motifs |
syndb.cbi.pku.edu.cn/sdb_index.php | SYNDB - Synapse Database |
bioportal.kobic.re.kr/SynechoNET/ | SynechoNET - SynechoNet: Integrated Protein-Protein Interaction Database of Synechocystis sp. PCC 6803 |
bioinformatics.charite.de/synsysnet/ | SynSysNet - Synaptic Proteins Database |
t2ddb.ibab.ac.in/home.shtml | T2D-Db - T2D-Db: An Integrated Data Resource on Type 2 Diabetes |
iomics.ugent.be/tabloidproteome | Tabloid Proteome - Tabloid Proteome |
songyanglab.sysu.edu.cn/telopin/ | TeloPIN - Telomeric Proteins Interaction Network |
netbio.bgu.ac.il/tissuenet/#/ | TissueNet - The Database of Human Tissue Protein-Protein Interactions |
trpchannel.org/ | TRIP - Mammalian Transient Receptor Potential Channel-Interacting Protein |
140.138.144.145/~ubinet/ | UbiNet - a web resource for exploring Ubiquitination Networks |
cisreg.ca/ulysses | Ulysses - Projection of Protein Networks across Species |
unihi.org/ | UniHI - Unified Human Interactome |
validness.ym.edu.tw/ | ValidNESs - Validated NES-containing proteins, functional NES sites and NES predictions |
vhldb.bio.unipd.it/ | VHLdb - a database of pVHL interactions and mutations |
virhostnet.prabi.fr/ | VirHostNet - Virus-Host Network |
virusmentha.uniroma2.it/ | Virus Mentha - The Viral Interactomes Browser |
mint.bio.uniroma2.it/virusmint/Welcome.do | VirusMINT - VirusMINT |
severus.dbmi.pitt.edu/wiki-pi/ | Wiki-Pi - Wiki-Pi: a wiki resource centred on human protein-protein interactions |
wormbase.org/ | WormBase - Worm Base |
portal.biobase-international.com/build_ghpywl/idb/1.0/html/b... | WormPD - Caenorhabditis elegans Proteome Database |
bioportal.kobic.re.kr/XooNET/ | XooNET - Integrated Protein-Protein Interaction database of Xanthomonas oryzae pathovar oryzae KACC1031 |
ycelldeath.com/yapoptosis/ | yApoptosis - yeast apoptosis database |
moseslab.csb.utoronto.ca/KID/ | Yeast KID - Yeast Kinase Interaction Database |
yeast.sourceforge.net/ | yeastnet - A Consensus Reconstruction of Yeast Metabolism |
ypa.csbb.ntu.edu.tw/index.html | YPA - Yeast Promoter Atlas |
acypicyc.cycadsys.org/ | AcypiCyc - Acyrthosiphon pisum Metabolic Pathways |
arabidopsisreactome.org | Arabidopsis Reactome - A curated knowledgebase of plant biological pathways |
arabidopsis.org/biocyc/introduction.jsp | AraCyc - Arabidopsis enzymes and biochemical pathways database |
bioinformatics.sdstate.edu/arapath/ | AraPath - AraPath: a knowledgebase for pathway analysis in Arabidopsis |
arthropodacyc.cycadsys.org/ | ArthropodaCyc - |
atipd.ethz.ch/ | AtIPD - Arabidopsis thaliana Isoprenoid Pathway Database |
cricket.ornl.gov/cgi-bin/beocyc_home.cgi | BESC BeoCyc - BioEnergy Science Center BeoCyc |
bigg.ucsd.edu/ | BiGG Models - |
biocyc.org/ | BioCyc - BioCyc Knowledge Library |
ebi.ac.uk/biomodels-main/ | BioModels - BioModels Database |
bionemo.bioinfo.cnio.es/ | Bionemo - Biodegradation Network Molecular Biology Database |
mn-am.com/databases/biopath | Biopath - Biochemical Pathways database |
biosilico.kaist.ac.kr | BioSilico - BioSilico |
brenda-enzymes.info/ | BRENDA - BRaunschweig ENzyme DAtabase |
bsubcyc.org/ | BsubCyc - BsubCyc |
cathacyc.org/ | CathaCyc - CathaCyc: Metabolic Pathway Database of Catharanthus roseus |
models.cellml.org/cellml | CellML Repository - CellML Model Repository |
corncyc_b73_v4.maizegdb.org/ | CornCyc - CornCyc |
pathways.cottongen.org/ | CottonGen - CottenCyc Pathways Database |
cbrc.kaust.edu.sa/deop/ | DEOP - Dragon Explorer of Osmoprotection Pathways |
ecmdb.ca/ | ECMDB - E. Coli Metabolome Database |
ecocyc.org/ | EcoCyc - Encyclopedia of E. coli Genes and Metabolism |
empproject.com/ | EMP - Enzymes and Metabolic Pathways Database |
enzyme.expasy.org/ | ENZYME - Enzyme nomenclature database |
ebi.ac.uk/enzymeportal/ | Enzyme Portal - EBI Enzyme Portal |
igenbio.com/ergo | ERGO - ERGO Genome Analysis and Discovery System |
web.expasy.org/pathways/ | BMPH - Boehringer Mannheim Biochemical Pathways Wall Chart |
expath.itps.ncku.edu.tw/ | EXPath - Comparative Expression Analysis Inferring Metabolic Pathways for Plants |
fly.reactome.org/ | FlyReactome - FlyReactome: a curated knowledgebase of drosophila melanogaster pathways |
fmm.mbc.nctu.edu.tw/ | FMM - From Metabolite to Metabolite |
pathways.rosaceae.org/ | GDR Cyc Pathways - Genome Database for Rosaceae Cyc Pathways |
qiagen.com/ca/geneglobe/ | GeneGlobe - GeneGlobe |
wwwmgs.bionet.nsc.ru/mgs/gnw/genenet/ | GeneNet - Genetic Networks |
genmapp.org/ | GenMAPP - Gene MicroArray Pathway Profiler |
microbesonline.org/cgi-bin/glamm | GLAMM - Genome-Linked Application for Metabolic Maps |
gold.tugraz.at/Main.jsp | GOLD.db - Genomics of Lipid-associated Disorders |
pathway.gramene.org/ | GRAMENE - Plant Metabolic Pathways |
hipathdb.kobic.re.kr/ | hiPathDB - human integrated Pathway DB with facile visualization |
hmdb.ca/ | HMDB - Human Metabolome Database |
discern.uits.iu.edu:8340/HPD/ | HPD - Human Pathway Database |
humancyc.org/ | HumanCyc - Encyclopedia of Homo sapiens genes and metabolism |
img.jgi.doe.gov/cgi-bin/w/main.cgi | IMG - Integrated Microbial Genomes |
imp.princeton.edu/ | IMP - Integrative Multi-species Prediction |
indigo.genetique.uvsq.fr | Indigo - Gene Neighborhoods and Codon Usage |
ebi.ac.uk/intenz/index.html | IntEnz - Integrated relational Enzyme database |
bioinfo.hsc.unt.edu/ipad/ | IPAD - the Integrated Pathway Analysis Database for Systematic Enrichment Analysis |
pathways.embl.de/ | iPath - interactive Pathways Explorer |
ipavs.cidms.org/ | iPAVS - Integrated Pathway Resources, Analysis and Visualization System |
jjj.bio.vu.nl/ | JWS Online - Online Cellular Systems Modelling |
kpv2.kazusa.or.jp/kpv4/ | KaPPA-View - Kazusa Plant Pathway Viewer |
genome.jp/kegg/ | KEGG - Kyoto Encyclopedia of Genes and Genomes |
browser.kpath.khaos.uma.es/ | kPath - |
llamp.net/ | LAMP - (Liverpool) Library of Apicomplexan Metabolic Pathways |
genome.jp/ligand/ | LIGAND - Molecular building blocks of life in the chemical space |
lipidmaps.org/ | LIPID MAPS - LIPID Metabolites and Pathways Strategy |
macrophages.com/ | Macrophages.com - The Macrophage Community Website |
maizecyc.maizegdb.org/ | MaizeCyc - MaizeCyc: metabolic pathways in maize |
mediccyc.noble.org/ | MedicCyc 2.0 - Medicago truncatula Pathway Database |
memosys.i-med.ac.at/MEMOSys/home.seam | MEMOSys - MEtabolic MOdel System |
metacrop.ipk-gatersleben.de/apex/f?p=269:111:::::: | MetaCrop - MetaCrop |
metacyc.org/ | MetaCyc - Metabolic Pathway Database |
metanetx.org/ | MetaNetX - Automated Model Construction and Genome Annotation for Large-Scale Metabolic Networks |
bioinformatics.leeds.ac.uk/metatiger/ | metaTIGER - metaTIGER: metabolic gene evolution resource |
metexplore.toulouse.inra.fr/joomla3/ | MetExplore - |
metnetweb.gdcb.iastate.edu/MetNet_db.htm | MetNetDB - Metabolic Network Exchange |
millipore.com/pathways/pw/pathways | Millipore Pathways - Your online source for visualizing metabolic and signaling pathways |
mitoproteome.org/ | MitoProteome - Human Mitochondrial Protein Database |
mmdb.iab.keio.ac.jp/ | MMMDB - Mouse Multiple tissue Metabolome DataBase |
modomics.genesilico.pl/ | MODOMICS - Modomics: a database of RNA modification pathways |
monod.molsci.org | Monod - Modeler's Notebook and Datastore |
mousecyc.jax.org/ | MouseCyc - Mouse Pathway Database |
inetbio.org/mousenet/ | MouseNetV2 - Probabilistic Functional Gene Network for Laboratory Mouse, Mus musculus |
gwu.edu/~mpb/ | MPB - Metabolic Pathways of Biochemistry |
mpmp.huji.ac.il/ | MPMP - Malaria Parasite Metabolic Pathways |
capb.dbi.udel.edu/whisler/ | MRAD - Metabolic Reaction Analysis Database |
bioinformatics.charite.de/mvoc/ | mVOC - Microbial Volatile Organic Compound Database |
ncbi.nlm.nih.gov/biosystems | NCBI BioSystems - NCBI BioSystems |
ndexbio.org/#/ | NDEx Public Server - The Network Data Exchange Public Server |
nematode.net/NN3_frontpage.cgi | Nematode.net - Nematode.net |
library.med.utah.edu/NetBiochem/NetWelco.htm | NetBiochem - Medical Biochemistry Resource |
iubmb-nicholson.org/ | Nicholson Minimaps - IUBMB-Nicholson Metabolic Maps, Minimaps & Animaps |
jubilantbiosys.com/services/functional-discovery-services/di... | PathArt - Pathway Articulator |
nashua.case.edu/PathwaysWeb/ | PathCase - CASE Pathways Database System |
ophid.utoronto.ca/pathdip/ | pathDIP - Pathway Data Integration Portal |
patika.org/ | PATIKA - Pathway Analysis Tool for Integration and Knowledge Acquisition |
pcoskb.bicnirrh.res.in/ | PCOSKB - PolyCystic Ovary Syndrome KnowledgeBase |
nashua.cwru.edu/pathways/ | PDS - Pathways Database System |
pharmgkb.org/ | PharmGKB - The Pharmacogenetics and Pharmacogenomics Knowledge Base |
plantreactome.gramene.org/ | Plant Reactome - Plant Reactome Pathway Database |
plantcyc.org/ | PlantCyc - Plant Metabolic Pathway Databases |
plasmodb.org/plasmo/ | PlasmoDB - Plasmodium Genomics Resource |
pmap.burnham.org/proteases/ | PMAP - The Proteolysis Map |
compbio.uthsc.edu/miRSNP/ | PolymiRTS DB - Polymorphism in microRNAs and their TargetSites |
integrativebioinformatics.com/processdb.html | ProcessDB - ProcessDB |
pseudomonas.com:1555/ | PseudoCyc - A Database of Metabolic Pathways in Pseudomonas aeruginosa PAO1 |
compbio.mcs.anl.gov/puma2 | PUMA2 - Evolutionary Analysis of Metabolism |
reactome.org | Reactome - Reactome KnowledgeBase |
pathway.gramene.org/gramene/ricecyc.shtml | RiceCyc - The rice metabolic pathway database |
iimcb.genesilico.pl/rnapathwaysdb/ | RNApathwaysDB - RNA Pathways Database: a database of RNA maturation and decay |
sabio.villa-bosch.de/ | SABIO-RK - SABIO-Reaction Kinetics Database |
sbml.org/models/ | SBML Model Repository - SBML Model Repository |
solgenomics.net/ | SGN - Sol Genomics Network |
smpdb.ca/ | SMPDB - Small Molecule Pathway Database |
compbio.uthsc.edu/SomamiR/ | SomamiR DB - Somatic mutations altering microRNA-ceRNA interactions |
soybase.org/ | SoyBase - USDA-ARS Soybean Genetics and Genome Database |
118.178.236.158/SoyFN/ | SoyFN - Soybean Functional Network |
subtiwiki.uni-goettingen.de/v3/pathway | SubtiPathways - SubtiPathways |
lifecenter.sgst.cn/SysPTM/ | SysPTM - A Systematic Resource for Post-Translational Modification |
systomonas.tu-bs.de/index.php | SYSTOMONAS - SYSTems biology of pseudOMONAS |
arabidopsis.org/ | TAIR - The Arabidopsis Information Resource |
tdrtargets.org/ | TDR Targets Database - The Tropical Disease Research Targets Database |
randr.nist.gov/enzyme/ | TECR - Thermodynamics of Enzyme-Catalyzed Reactions |
theseed.uchicago.edu/FIG/index.cgi | The SEED - |
genexplain.com/transpath/ | TRANSPATH - TRANSPATH |
metexplore.fr/trypanocyc/ | Trypanocyc - The Pathway/Genome Database of Trypanosoma brucei |
eawag-bbd.ethz.ch/ | UM-BBD - Biocatalysis/Biodegradation Database |
grenoble.prabi.fr/obiwarehouse/unipathway | UniPathway - UniPathway: a resource for the exploration of metabolic pathways |
wholecellkb.org/ | WholeCellKB - WholeCellKB: Mycoplasma Genitalium Database |
wikipathways.org/index.php/WikiPathways | WikiPathways - WikiPathways |
wit.mcs.anl.gov/WIT2/ | WIT - What Is There? |
cheminfo.charite.de/withdrawn/ | WITHDRAWN - A Resource for Withdrawn and Discontinuous Drugs |
ymdb.ca/ | YMDB - The Yeast Metabolome Database |
agingchart.org/wiki/Main_Page | AgingChart - Aging Chart |
alzpathway.org/AlzPathway.html | AlzPathway - A Comprehensive Map of Signaling Pathways of Alzheimer's Disease |
causalbionet.com/ | CBN - Causal Biological Networks Database |
itb.cnr.it/cellcycle/ | CCDB - The Cell Cycle Database |
cells-talk.com/ | COPE - Cytokines and Cells Online Pathfinder Encyclopedia |
geo.nihs.go.jp/csndb/ | CSNDB - Cell Signaling Networks Database |
cellsignal.com/common/content/content.jsp?id=science-pathway... | CST - Cell Signaling Technology Pathway Database |
slapp04.mssm.edu/primeportalpages/DC_signaling_pathway_map/D... | DC Pathway - Dendritic Cell Signaling Pathway Map |
valkyrie.us.es/lab219_ddr_web/Web/ | DDRprot - DNA Damage Response proteins database |
dnatraffic.ibb.waw.pl/ | DNAtraffic - DNAtraffic Database |
doqcs.ncbs.res.in/ | DOQCS - Database of Quantitative Cellular Signaling |
discover.nci.nih.gov/mim/index.jsp | eMIM - Electronic Molecular Interaction Map |
endonet.bioinf.med.uni-goettingen.de/ | EndoNet - EndoNet |
genetex.com/Web/Pathway/Pathways.aspx | GeneTex - GeneTex |
hedgehog.sfsu.edu/ | Hedgehog - Hedgehog Signaling Pathway Database |
inoh.org | INOH - Integrating Network Objects with Hierarchies |
macpak.csml.org/ | MACPAK - Simulatable Macrophage Pathway Knowledgebase |
mirrorsuite.cs.huji.ac.il/ | miRror-Suite - A Dual View on Sets of microRNAs and their Targets |
netpath.org/ | NetPath - NetPath: Signal Transduction Pathways |
netpath.org/netslim | NetSlim - NetSlim |
omnipathdb.org/ | OmniPath - OmniPath |
ontocancro.inf.ufsm.br/ | Ontocancro - Ontocancro |
pantherdb.org | PANTHER - Protein ANalysis THrough Evolutionary Relationships |
pathoplant.de/ | PathoPlant - PathoPlant |
pid.nci.nih.gov/ | PID - NCI-Nature Pathway Interaction Database |
crdd.osdd.net/raghava//prrdb/ | PRRDB - Pattern Recognition Receptor Database |
repairtoire.genesilico.pl/ | REPAIRtoire - REPAIRtoire: a database of DNA repair pathways |
rospath.ewha.ac.kr/ | ROSPath - Reactive Oxygen Species related Signaling Pathway |
compbio.mcs.anl.gov/sentra/ | Sentra - Sentra Signal Transduction Database |
sigmaaldrich.com/Area_of_Interest/Life_Science/Cell_Signalin... | SIGMA-ALDRICH - Cell Signalling Pathway Slides & Charts |
signafish.org/ | SignaFish - |
icb.med.cornell.edu/crt/SigPath/index.xml | SigPath - Signaling Pathway Information System |
grt.kyushu-u.ac.jp/spad/ | SPAD - Signaling Pathway Database |
cs.tau.ac.il/~spike/ | SPIKE - Signaling Pathway Integrated Knowledge Engine |
techfak.uni-bielefeld.de/~mchen/STCDB | STCDB - Signal Transduction Classification Database |
stke.sciencemag.org/about/help/cm | STKE - Signal Transduction Knowledge Environment |
bidd.nus.edu.sg/group/trmp/trmp_ns.asp | TRMP - Therapeutically Relevant Multiple Pathways Database |
wwwmgs.bionet.nsc.ru/mgs/gnw/trrd/ | TRRD - Transcription Regulatory Regions Database |
web.stanford.edu/group/nusselab/cgi-bin/wnt/ | Wnt Database - The Wnt Database |
phosphorylation.biochem.vt.edu/ | XPD - Phosphorylation Site Database |
xtalkdb.org/home | XTalkDB - |
bbid.grc.nia.nih.gov/ | BBID - Biological Biochemical Image Database |
biocarta.com/ | BioCarta - BioCarta Pathway Diagrams |
drastic.org.uk/ | Drastic - Database Resource for Analysis of Signal Transduction In Cells |
web.mit.edu/glycomics/gt/gtdb.shtml | GTDB - Glycosylation Pathways Database |
insect-genome.com/ | InsectBase - Integrated Genome and Transcriptome Resources for Insects |
discover.nci.nih.gov/mim/kohnk/kohnk.jsp | KMIM - Kohn Molecular Interaction Maps |
sigmaaldrich.com/Area_of_Interest/Life_Science/PathFinder.ht... | PathFinder - Cell Signaling Pathways |
t1dbase.org | T1DBase - Type 1 Diabetes Database |
abasy.ccg.unam.mx/ | Abasy Atlas - Across-bacteria systems Atlas |
genome.crg.es/datasets/abs2005/ | ABS - Annotated regulatory Binding Sites |
arabidopsis.med.ohio-state.edu/ | AGRIS - Arabidopsis Gene Regulatory Information Server |
ma.uni-heidelberg.de/apps/zmf/argonaute/interface/ | Argonaute - Gene regulation by mammalian micro-RNAs |
210.27.80.93/arn/ | ARN - Adipogenesis Regulation Network |
athamap.de/ | AthaMap - AthaMap |
bioinformatics2.wsu.edu/cgi-bin/Athena/cgi/home.pl | Athena - Athena |
atpan.itps.ncku.edu.tw/ | AtPAN - Arabidopsis thaliana Promoter Analysis Net |
atrm.cbi.pku.edu.cn/ | ATRM - Arabidopsis Transcriptional Regulatory Map |
aura.science.unitn.it/ | AURA - Atlas of UTR Regulatory Activity |
genescene.arizona.edu/index.html | BioPathway Visualizer - Arizona BioPathway Visualizer |
kwanlab.bio.cuhk.edu.hk/BSRD/ | BSRD - Bacterial Small Regulatory RNA Database |
rna.sysu.edu.cn/chipbase/ | ChIPBase - |
circnet.mbc.nctu.edu.tw/ | CircNet - A Database of Circular RNAs |
cirgrdb.biols.ac.cn/ | CirGRDB - Circadian gene and regulators database |
cisred.org/ | cisRED - Cis-regulatory element database |
collectf.umbc.edu/browse/home/ | CollecTF - A Database of Transcription Factor Binding Sites in the Bacteria Domain |
compel.bionet.nsc.ru/ | COMPEL - Database on Composite Regulatory Elements |
cosbi.ee.ncku.edu.tw/CoopTFD/ | CoopTFD - Cooperative Transcription Factors Database |
coryneregnet.compbio.sdu.dk/v6/index.html | CoryneRegNet - Database of Corynebacterial Transcription Factors and Regulatory Networks |
datf.cbi.pku.edu.cn/ | DATF - Database of Arabidopsis Transcription Factors |
transcriptionfactor.org/index.cgi?Home | DBD - DNA-Binding Domain: Transcription Factor Predictor Database |
dbtbs.hgc.jp/ | DBTBS - Database of Bacillus subtilis Promoters and Transcription Factors |
dbtgr.hgc.jp/ | DBTGR - DataBase of Tunicate Gene Regulation |
digital-development.org/ | Digital Development Database - Lineage Differentiation and Phenotypes in C. elegans |
arep.med.harvard.edu/dpinteract/ | DPInteract - DNA-Protein Interactions Database |
syslab.nchu.edu.tw/DPRP/ | DPRP - A Database of Phenotype-Specific Regulatory Programs Derived From Transcription Factor Binding Data |
rna.sysu.edu.cn/dreamBase | dreamBase - dreamBase |
drtf.cbi.pku.edu.cn/ | DRTF - Database of Rice Transcription Factors |
ecrbase.dcode.org | ECRbase - Evolutionary conserved region database |
bioinformatics.cs.vt.edu/expresso/ | Expresso - Exploring the Interaction of Transcription Factors and Their Target Genes in Plants using ChIP-Seq Data |
mccb.umassmed.edu/ffs/ | FlyFactorSurvey - FlyFactorSurvey: Database of Drosophila TF DNA-Binding Specifities |
flytf.org/ | FlyTF - The Drosophila Transcription Factor Database |
urchin.spbcas.ru/genet/genet.htm | GeNet - Gene Networks Database |
bioinformatics.med.ohio-state.edu/HemoPDB/ | HemoPDB - Hematopoiesis Promoter Database |
iephb.nw.ru/labs/lab38/spirov/hox_pro/hox-pro00.html | HoxPro - HOX Pro |
bioinfo.wilmer.jhu.edu/PDI/ | hPDI - Human Protein-DNA Interactome |
compbio.uthscsa.edu/hrtbldb/ | HRTBLDb - Hormone Receptor Target Binding Loci Database |
ccg.vital-it.ch/htpselex/ | HTPSELEX - HTPSELEX |
itfp.biosino.org/itfp/ | ITFP - Intergrated Transcription Factor Platform |
jaspar.genereg.net | JASPAR - JASPAR Transcription Factor Binding Profile Database |
bioinformatics.ustc.edu.cn/lncreg/ | LncReg - database for LncRNA regulatory networks |
rulai.cshl.edu/LSPD/ | LSPD - The Liver Specific Gene Promoter Database |
genome.ufl.edu/mapper/mapper-main | MAPPER - Multi-genome Analysis of Positions and Patterns of Elements of Regulation |
microrna.org/microrna/home.do | microrna.org - Microrna.org target database |
mirbase.org/index.shtml | miRBase - microRNA Database |
c1.accurascience.com/miRecords/ | miRecords - miRecords |
mirnamap.mbc.nctu.edu.tw/ | miRNAMap - MicroRNA Map |
motifmap.ics.uci.edu/ | MotifMap - MotifMap |
mpromdb.wistar.upenn.edu/ | MPromDb - Mammalian Promoter Database |
mycoregnet.cebitec.uni-bielefeld.de | MycoRegNet - Mycobacterial transcription factors and regulatory networks |
nottingham.ac.uk/~plzloose/mygrn/ | myGRN - my Genetic Regulatory Network |
bhapp.c2b2.columbia.edu/OnTheFly/ | OnTheFly - A Database of Drosophila melanogaster Transcription Factors and their Binding Sites |
orti.sydney.edu.au/ | ORTI - Open-access Repository of Transcriptional Interaction |
p2tf.org/ | P2TF - Predicted Prokaryotic Transcription Factors |
pazar.info/ | PAZAR - A Public Database of Transcription Factor and Regulatory Sequence Annotation |
phisite.org/main/ | phiSITE - phiSITE: Database of Gene Regulation in Bacteriophages |
bioinformatics.psb.ugent.be/webtools/plantcare/html/ | PlantCARE - Plant Cis-Acing Regulatory Elements |
planttfdb.cbi.pku.edu.cn/ | PlantTFDB - Plant Transcription Factor Database |
plntfdb.bio.uni-potsdam.de/v3.0/ | PlnTFDB - Plant Transcription Factor Database |
prodoric.tu-bs.de/ | PRODORIC - Prokaryotic database of gene regulation |
prodoric2.de/ | PRODORIC2 - DNA binding sites for prokaryotic transcription factors |
cagr.pcbi.upenn.edu/PTMswitchboard/ | PTM-Switchboard - Post-Translational Modification-Switchboard |
redfly.ccr.buffalo.edu/ | REDfly - Regulatory Element Database for Drosophila |
regnetworkweb.org/ | RegNetwork - Regulatory Network Repository |
regprecise.lbl.gov/RegPrecise/ | RegPrecise - RegPrecise: Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes |
regtransbase.lbl.gov/cgi-bin/regtransbase | RegTransBase - RegTransBase |
regulondb.ccg.unam.mx/ | RegulonDB - Database on Transcriptional Regulation and Genome Organization |
nipgr.res.in/RiceSRTFDB.html | RiceSRTFDB - The Rice Stress-Responsive Transcription Factor Database |
wwwmgs.bionet.nsc.ru/mgs/systems/rsnp/ | rSNP Guide - rSNP Guide |
stormo.wustl.edu/ScerTF/ | ScerTF - ScerTF |
rulai.cshl.edu/SCPD/ | SCPD - The Promoter Database of Saccharomyces cerevisiae |
sporeweb.molgenrug.nl/ | Sporeweb - |
caps.ncbs.res.in/stifdb2/ | STIFDB - Stress Responsive Transcription Factor Database |
diana.imis.athena-innovation.gr/DianaTools/index.php?r=tarba... | TarBase - TarBase |
compbio.massey.ac.nz/apps/tcof/home/ | TcoF-DB - Database of Transcription co-factors and transcription factor interactions |
tfgd.ihb.ac.cn/ | TetraFGD - Tetrahymena Functional Genomics Database |
tfclass.bioinf.med.uni-goettingen.de/tfclass | TFClass - Classification of Human Transcription Factors and Mouse Orthologs |
cisreg.cmmt.ubc.ca/cgi-bin/tfe/home.pl | TFe - Transcription Factor encyclopedia |
bioinfozen.uncc.edu/tfindit/ | TFinDit - Transcription Factor-DNA Interaction Data Depository |
networks.systemsbiology.net/ | The Network Portal - |
tractor.lncc.br/ | TRACTOR_DB - TRACTOR_DB |
genexplain.com/transfac/ | TRANSFAC - Transcription Factor Database |
cb.utdallas.edu/cgi-bin/TRED/tred.cgi?process=home | TRED - Transcriptional Regulatory Element Database |
grnpedia.org/trrust/ | TRRUST - Transcriptional Regulatory Relationships Unraveled by Sentence-based Text mining |
bioinf.uab.es/cgi-bin/trsdb/trsdb.pl | TrSDB - A Proteome Database of Transcription Factors |
inetbio.org/yeastnet/ | YeastNet - Probabilistic Functional Gene Network of Saccharomyces cerevisiae |
yeastract.com/ | YEASTRACT - YEAst Search for Transcriptional Regulators And Consensus Tracking |
cosbi3.ee.ncku.edu.tw/YTRP/ | YTRP - Yeast Transcriptional Regulatory Pathway Database |
137.189.133.71/YY1TargetDB/ | YY1TargetDB - Yin Yang 1 Target Database |
pc1664.pharmazie.uni-marburg.de/affinity/ | AffinDB - Affinity database for protein-ligand complexes |
bindingmoad.org/ | Binding MOAD - Binding Mother of all Databases |
bindingdb.org/bind/index.jsp | BindingDB - The Binding Database |
zhanglab.ccmb.med.umich.edu/BioLiP/ | BioLiP - Ligand-Protein Binding Database |
mordred.bioc.cam.ac.uk/bipa | BIPA - Biological Interaction database for Protein-nucleic Acid |
data-analysis.charite.de/care/ | CancerResource - CancerResource |
ebi.ac.uk/chembldb/ | ChEMBLdb - ChEMBL Database |
bidd.nus.edu.sg/group/clibe/clibe.asp | CLiBE - Computed Ligand Binding Energy |
marid.bioc.cam.ac.uk/credo/ | CREDO - CREDO: A Structural Interactomics Database For Drug Discovery |
ctd.mdibl.org/ | CTD - Comparative Toxicogenomics Database |
ppa.bcf.ku.edu/DB_PABP/ | DB-PABP - Database of Polyanion Binding Proteins |
dpidb.genebee.msu.ru/ | DPIDB - DNA-Protein Interaction Database |
drug2gene.com/ | drug2gene - drug2gene |
drugbank.ca/ | DrugBank - DrugBank |
pharminfo.pharm.kyoto-u.ac.jp/services/glida/ | GLIDA - GPCR-Ligand Database |
guidetopharmacology.org/ | Guide to Pharmacology - Guide to Pharmacology |
hetpdbnavi.nagahama-i-bio.ac.jp/index.php?mode=0 | Het-PDB_Navi - Het-PDB Navi |
bioafrica.net/proteomics/HIVproteome.html | HIV Proteome - HIV Proteome |
mips.helmholtz-muenchen.de/HoPaCI/ | HoPaCI-db - Host-Pseudomonas and Coxiella Interaction DataBase |
iuphar-db.org/ | IUPHAR-DB - The International Union of Basic and Clinical Pharmacology Database |
kibank.iis.u-tokyo.ac.jp | KiBank - KiBank |
klifs.vu-compmedchem.nl/ | KLIFS - Kinase-Ligand Interaction Fingerprints and Structures database |
ligand-depot.rutgers.edu/ | Ligand Expo - Ligand Expo |
ligasite.org/ | LigASite - Ligand Attachment Site |
matador.embl.de/ | MATADOR - Manually Annotated Targets and Drugs Online Resource |
metallo.scripps.edu/ | MDB - Metalloprotein Database |
lsresearch.thomsonreuters.com/pages/solutions/18/metadrug | MetaDrug - MetaDrug |
www-metrabase.ch.cam.ac.uk/ | Metrabase - Metabolism and Transport Database |
nbdb.bii.a-star.edu.sg/ | NBDB - Nucleotide Binding DataBase |
nldb.hgc.jp/nldb/top | NLDB - Natural Ligand Database |
nrresource.org/ | NRR - Nuclear Receptor Resource |
senselab.med.yale.edu/OrDB/ | ORDB - Olfactory Receptor Database |
idrtech.com/PDB-Ligand/ | PDB-Ligand - PDB-Ligand |
pdbbind-cn.org/ | PDBbind - PDBbind |
kidbdev.med.unc.edu/databases/kidb.php | PDSP Ki Database - Psychoactive Drug Screening Program Ki Database |
dddc.ac.cn/pdtd/ | PDTD - Potential Drug Target Database |
switchlab.org/bioinformatics/pepx | PepX - Peptide compleXes |
biosig.unimelb.edu.au/platinum/ | PLATINUM - Protein-Ligand Affinity Change Upon Mutation Database |
www-mitchell.ch.cam.ac.uk/pld/ | PLD - Protein Ligand Database |
bioinformatics.hsanmartino.it/pli/ | PLI - Protein-Ligand Interaction |
proline.biochem.iisc.ernet.in/PLIC/ | PLIC - Protein-Ligand Interaction Clusters |
pocketome.org/ | Pocketome - Pocketome |
possum.cbrc.jp/PoSSuM/ | PoSSuM - Pocket Similarity Search using Multi-Sketches |
pcidb.russelllab.org/ | ProtChemSI - ProtChemSI: the database of protein-chemical structural interactions |
compbio.cs.toronto.edu/psmdb | PSMDB - Protein / Small-molecule database |
rcsb.org/pdb/home/home.do | RCSB PDB - The Research Collaboratory for Structural Bioinformatics Protein Data Bank |
relibase.ccdc.cam.ac.uk/account_utilities/login_form.php | Relibase - Protein-ligand database query tool |
bioinfo3d.cs.tau.ac.il/RsiteDB/ | RsiteDB - RNA binding sites data base |
cheminfo.u-strasbg.fr/scPDB/ | sc-PDB - An Annotated Database of Druggable Binding Sites from the Protein DataBank |
pegasus.isi.edu/application-showcase/structural-protein-liga... | SPLINTER - Structural Protein-Ligand Interactome |
srnamap.mbc.nctu.edu.tw/ | sRNAMap - Small noncoding RNA Map |
stitch.embl.de/ | STITCH - Chemical-Protein Interaction Networks |
bioinformatics.charite.de/supercyp/ | SuperCYP - SuperCYP, Cytochrome P450 Database |
bioinf-tomcat.charite.de/supersite/ | SuperSite - SuperSite |
swisslipids.org/#/ | SwissLipids - A Knowledge Resource for Lipids and their Biology |
t3db.ca/ | T3DB - Toxin and Toxin-Target Database |
targetprotein.res.ku.edu/ | TPDB - Target Protein Database |
bioinformatics.charite.de/transformer/ | Transformer - Metabolism of Xenobiotics Database |
bidd.nus.edu.sg/group/cjttd/TTD_HOME.asp | TTD - Therapeutic Targets Database |
thebrain.bwh.harvard.edu/uniprobe/ | UniPROBE - Universal Protein Binding Microarray Resource for Oligonucleotide Binding Evaluation |
inetbio.org/aranet/ | AraNet - AraNet: Probabilistic Functional Gene Network of Arabidopsis Thaliana |
cisban-silico.cs.ncl.ac.uk/cid.html | CID - CISBAN Cross-Species Interactome Database |
drygin.ccbr.utoronto.ca/ | DRYGIN - Data Repository of Yeast Genetic INteractions |
geneorienteer.org/ | GeneOrienteer - Gene Orienteer |
genepath.org/ | GenePath - GenePath |
ncbi.nlm.nih.gov/pubmed/9322024 | KNIFE - Drosophila pattern formation knowledge base |
mouseidgenes.helmholtz-muenchen.de/MouseIDGenes/ | Mouse IDGenes - Gene interactions in the developing mouse brain |
bioinfo.uth.edu/mutLBSgeneDB/ | mutLBSgeneDB - mutated Ligand Binding Site gene DataBase |
bioinformatics.caf.ac.cn/PoplarGene/ | PoplarGene - |
compbio.dfci.harvard.edu/predictivenetworks// | Predictive Networks - Predictive Networks |
histone.sce.ntu.edu.sg/SynLethDB/ | SynLethDB - Synthetic Lethality Database |
www-abcdb.biotoul.fr/ | ABCdb - Archaea and Bacteria ABC Systems database |
bioinformatica.isa.cnr.it/ASC/ | ASC - Active Sequences Collection |
inteins.com/ | InBase - The Intein Database |
merops.sanger.ac.uk/ | MEROPS - MEROPS Peptidase Database |
proteinmodelportal.org/ | PMP - The Protein Model Portal |
polygenicpathways.co.uk/ | PSP - Polygenic signaling pathways |
rebase.neb.com/rebase/rebase.html | REBASE - Restriction Enzyme Database |
enzome.com/enzome/databases/scopec.php | SCOPEC - Database of protein catalytic domains |
liferay.csb.univie.ac.at/portal/web/simap | SIMAP - The Similarity Matrix of Proteins |
tumor-gene.org/tgdf.html | TGDB - Tumor Gene Database |
biotech.icmb.utexas.edu/aint_top.html | AANT - Amino Acid-Nucleotide Interaction Database |
biobases.ibch.poznan.pl/aars/ | AARSDB - Aminoacyl-tRNA Synthetase Database |
atmirnet.itps.ncku.edu.tw/ | AtmiRNET - Reconstructing regulatory networks of Arabidopsis thaliana miRNAs |
cls.zju.edu.cn/dcdb/ | DCDB - Drug Combination Database |
dgidb.genome.wustl.edu/ | DGIdb - The Drug Gene Interaction Database |
210.46.85.180:8080/EpimiR/ | EpimiR - Curated Mutual Regulation between Epigenetic Modification and MiRNA |
sbrg2.gist.ac.kr/hcnet/ | HCNet - Heart and Calcium Functional Network Database |
ihop-net.org/UniPub/iHOP/ | iHOP - Information Hyperlinked Over Proteins |
carolina.imis.athena-innovation.gr/diana_tools/web/index.php... | LncBase - |
bioinfo.life.hust.edu.cn/lncRInter/ | lncRInter - Database of long non-coding RNA interaction |
lncrna2target.org/ | LncRNA2Target - The lncRNA Target Gene Database |
cuilab.cn/lncrnadisease | LncRNADisease - The LncRNA and Disease Database |
bioinfo.life.hust.edu.cn/lncRNASNP/ | lncRNASNP - A Database of Single Nucleotide Polymorphisms in long non-coding RNAs |
medgene.med.harvard.edu/MEDGENE/ | MedGene - MedGene |
merna.lbl.gov/ | MeRNA - Metals in RNA |
www4a.biotec.or.th/micropir2/ | microPIR - microRNA-promoter interactions resource |
mirtarbase.mbc.nctu.edu.tw/ | miRTarBase - The Experimentally Validated microRNA-target Interactions Database |
ophid.utoronto.ca/networx/ | NetwoRx - |
npidb.belozersky.msu.ru/ | NPIDB - Nucleic Acid-Protein Interaction Database |
bioinfo.org/NPInter/index.htm | NPInter - Noncoding RNAs and protein related biomacromolecules interaction database |
lulab.life.tsinghua.edu.cn/postar/ | POSTAR - a platform of POST-trAnscriptional Regulation |
pri.hgc.jp/ | PRD - Protein-RNA Interaction Database |
precise.bu.edu/ | Precise - Predicted and Consensus Interaction Sites in Enzymes |
www-bioc.rice.edu/~shamoo/prid.html | PRID - Protein-RNA Interaction Database |
pridb.gdcb.iastate.edu/ | PRIDB - Protein-RNA Interface Database |
abren.net/pronit/pronit.php | ProNIT - Thermodynamic Database for Protein-Nucleic Acid Interactions |
rna-society.org/raid/ | RAID v2 - RNA Association Interaction Database |
rbp-var.biols.ac.cn/ | RBP-Var - |
rhea-db.org/ | Rhea - Reaction database |
iimcb.genesilico.pl/rnabricks2/ | RNA Bricks 2 - |
wwwmgs.bionet.nsc.ru/mgs/systems/selex/ | SELEX_DB - Randomized DNA/RNA sequence database |
ccb1.bmi.ac.cn/srnatarbase/ | sRNATarBase - sRNA-Target Interactions in Bacteria |
starbase.sysu.edu.cn/ | starBase - |
tcdb.org/ | TCDB - Transporter Classification Database |
membranetransport.org/transportDB2/index.html | TransportDB - TransportDB |
rna-society.org/virbase/ | ViRBase - Virus-Host ncRNA Interaction Database |
crdd.osdd.net/servers/virmirna/ | VIRmiRNA - Resource for Experimental Viral miRNA and their Targets |
baderlab.org/GaryBader | Gary Bader |
baderlab.org/VukPavlovic | Vuk Pavlovic |
ohsu.edu/xd/education/schools/school-of-medicine/departments... | Emek Demir |
baderlab.org | Bader Lab |
sanderlab.org/ | Sander Group |
host-tracker.com/ | <img> |
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pathguide.org/statistics.php | Statistics |
pathguide.org/interactions.php | Database Interactions |
contact.php | send us an e-mail |
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